{"id":10,"date":"2021-08-09T20:27:11","date_gmt":"2021-08-09T20:27:11","guid":{"rendered":"https:\/\/biodelya.com\/?page_id=10"},"modified":"2024-06-18T10:13:02","modified_gmt":"2024-06-18T10:13:02","slug":"about","status":"publish","type":"page","link":"https:\/\/biodelya.com\/index.php\/about\/","title":{"rendered":"Publications"},"content":{"rendered":"\t\t
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Peer Review Papers<\/h2>\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t
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GPCR Signaling: A Study of the Interplay between Structure, Energy, and Function<\/strong>
Chalopin, Y.
Proteins: Structure, Function, and Bioinformatics<\/em>
2024<\/p>\n

Phonon-assisted electron-proton transfer in [FeFe] hydrogenases: Topological role of clusters<\/strong>
Y Chalopin, SP Cramer, S Arragain
Biophysical Journal<\/em> 122 (8), 1557-1567
2023<\/p>\n

Energy bilocalization effect and the emergence of molecular functions in proteins<\/strong>
Y Chalopin, J Sparfel
Frontiers in Molecular Biosciences<\/em> 8, 736376
2021<\/p>\n

The physical origin of rate promoting vibrations in enzymes revealed by structural rigidity<\/strong>
Y Chalopin
Scientific Reports<\/em> 10 (1), 17465
2020<\/p>\n

A Statistical Approach of Thermal Transport at Nanoscales: From Solid-State to Biological Applications<\/strong>
Y Chalopin
Handbook of Materials Modeling: Applications: Current and Emerging Materials<\/em>
2020<\/p>\n

Universality of fold-encoded localized vibrations in enzymes<\/strong>
Y Chalopin, F Piazza, S Mayboroda, C Weisbuch, M Filoche
Scientific Reports<\/em> 9 (1), 12835
2019<\/p>\n

Distinguishing between spatial coherence and temporal coherence of phonons<\/strong>
B Latour, Y Chalopin
Physical Review B<\/em> 95 (21), 214310
2017<\/p>\n

Adverse effects of polymer coating on heat transport at the solid\u2013liquid interface<\/strong>
S Ju, B Palpant, Y Chalopin
The Journal of Physical Chemistry C<\/em> 121 (25), 13474-13480
2017<\/p>\n

Nanoscale Brownian heating by interacting magnetic dipolar particles<\/strong>
Y Chalopin, JC Bacri, F Gazeau, M Devaud
Scientific Reports<\/em> 7 (1), 1656
2017<\/p>\n

Electric polarizability of lipid bilayers: The influence of the structure<\/strong>
J Soussi, Y Chalopin
The Journal of Chemical Physics<\/em> 143 (14)
2015<\/p>\n

Efficient phonon blocking in SiC antiphase superlattice nanowires<\/strong>
S Xiong, B Latour, Y Ni, S Volz, Y Chalopin
Physical Review B<\/em> 91 (22), 224307
2015<\/p>\n

A detailed microscopic study of the heat transfer at a water gold interface coated with a polymer<\/strong>
J Soussi, S Volz, B Palpant, Y Chalopin
Applied Physics Letters<\/em> 106 (9)
2015<\/p>\n

Thermal interface conductance between aluminum and silicon by molecular dynamics simulations<\/strong>
N Yang, T Luo, K Esfarjani, A Henry, Z Tian, J Shiomi, Y Chalopin, B Li, …
Journal of Computational and Theoretical Nanoscience<\/em> 12 (2), 168-174
2015<\/p>\n

Microscopic description of thermal-phonon coherence: From coherent transport to diffuse interface scattering in superlattices<\/strong>
B Latour, S Volz, Y Chalopin
Physical Review B<\/em> 90 (1), 014307
2014<\/p>\n

Substrate-induced cross-plane thermal propagative modes in few-layer graphene<\/strong>
Y Ni, YA Kosevich, S Xiong, Y Chalopin, S Volz
Physical Review B<\/em> 89 (20), 205413
2014<\/p>\n

Classical to quantum transition of heat transfer between two silica clusters<\/strong>
S Xiong, K Yang, YA Kosevich, Y Chalopin, R D\u2019Agosta, P Cortona, …
Physical Review Letters<\/em> 112 (11), 114301
2014<\/p>\n

Tailoring properties of graphene with vacancies<\/strong>
AV Pokropivny, Y Ni, Y Chalopin, YM Solonin, S Volz
Physica Status Solidi (b)<\/em> 251 (3), 555-558
2014<\/p>\n

Quantized thermal conductance of nanowires at room temperature due to Zenneck surface-phonon polaritons<\/strong>
J Ordonez-Miranda, L Tranchant, B Kim, Y Chalopin, T Antoni, S Volz
Physical Review Letters<\/em> 112 (5), 055901
2014<\/p>\n

Thermal conductivity of nano-layered systems due to surface phonon-polaritons<\/strong>
J Ordonez-Miranda, L Tranchant, Y Chalopin, T Antoni, S Volz
Journal of Applied Physics<\/em> 115 (5)
2014<\/p>\n

Effects of anisotropy and size of polar nano thin films on their thermal conductivity due to surface phonon-polaritons<\/strong>
J Ordonez-Miranda, L Tranchant, B Kim, Y Chalopin, T Antoni, S Volz
Applied Physics Express<\/em> 7 (3), 035201
2014<\/p>\n

Surface enhanced infrared absorption in dielectric thin films with ultra-strong confinement effects<\/strong>
Y Chalopin, M Hayoun, S Volz, H Dammak
Applied Physics Letters<\/em> 104 (1)
2014<\/p>\n

Fundamental issues in nanoscale heat transfer: From Coherenc to interfacial resistance in heat conduction<\/strong>
S Volz, B Latour, Y Chalopin
International Conference on Heat Transfer, Fluid Mechanics and Thermodynamics<\/em>
2014<\/p>\n

Heat Transport Along Polar Nanofilms Due to Surface Phonon-Polaritons<\/strong>
J Ordonez-Miranda, L Tranchant, B Kim, Y Chalopin, T Antoni, S Volz
International Heat Transfer Conference Digital Library<\/em>
2014<\/p>\n

Equilibrium molecular dynamics simulations on interfacial phonon transport<\/strong>
Y Chalopin, A Rajabpour, H Han, Y Ni, S Volz
Annual Review of Heat Transfer<\/em> 17
2014<\/p>\n

Microscopic description of coherent transport by thermal phonons<\/strong>
B Latour, S Volz, Y Chalopin
arXiv preprint arXiv:1311.5045<\/em>
2013<\/p>\n

Few layer graphene based superlattices as efficient thermal insulators<\/strong>
Y Ni, Y Chalopin, S Volz
Applied Physics Letters<\/em> 103 (14)
2013<\/p>\n

Significant thickness dependence of the thermal resistance between few-layer graphenes<\/strong>
Y Ni, Y Chalopin, S Volz
Applied Physics Letters<\/em> 103 (6)
2013<\/p>\n

A microscopic formulation of the phonon transmission at the nanoscale<\/strong>
Y Chalopin, S Volz
Applied Physics Letters<\/em> 103 (5)
2013<\/p>\n

Modulated SiC nanowires: Molecular dynamics study of their thermal properties<\/strong>
K Termentzidis, T Barreteau, Y Ni, S Merabia, X Zianni, Y Chalopin, …
Physical Review B<\/em> 87 (12), 125410
2013<\/p>\n

Anomalous thermal conductivity by surface phonon-polaritons of polar nano thin films due to their asymmetric surrounding media<\/strong>
J Ordonez-Miranda, L Tranchant, T Tokunaga, B Kim, B Palpant, …
Journal of Applied Physics<\/em> 113 (8)
2013<\/p>\n

Nanoscale thermoelectric materials–thermal and electrical transport, and applications to solid-state cooling and power generation<\/strong>
S Beckman, H B\u00f6ttner, Y Chalopin, C Dames, PA Greaney, P Hopkins, …
Materials Research Society<\/em>
2013<\/p>\n

Thermal conductivity and Kapitza resistance of diameter modulated SiC nanowires, a molecular dynamics study<\/strong>
K Termentzidis, T Barreteau, Y Ni, H Huedro, AL Delaye, X Zianni, …
Journal of Physics: Conference Series<\/em> 395 (1), 012107
2012<\/p>\n

Surface Phonon Polariton Mediated Thermal Conduction of a Micrometric Glass Waveguide<\/strong>
L Tranchant, T Tokunaga, B Kim, N Takama, Y Chalopin, S Volz
Journal of Physics: Conference Series<\/em> 395 (1), 012087
2012<\/p>\n

Calculation of inter-plane thermal resistance of few-layer graphene from equilibrium molecular dynamics simulations<\/strong>
Y Ni, Y Chalopin, S Volz
Journal of Physics: Conference Series<\/em> 395 (1), 012106
2012<\/p>\n

Large effects of pressure induced inelastic channels on interface thermal conductance<\/strong>
Y Chalopin, N Mingo, J Diao, D Srivastava, S Volz
Applied Physics Letters<\/em> 101 (22), 221903
2012<\/p>\n

Ballistic thermal conductance of a Lab-in-a-TEM made Si nanojunction<\/strong>
L Jalabert, T Sato, T Ishida, H Fujita, Y Chalopin, S Volz
Nano Letters<\/em> 12 (10), 5213-5217
2012<\/p>\n

Size-dependent infrared properties of MgO nanoparticles with evidence of screening effect<\/strong>
Y Chalopin, H Dammak, M Hayoun, M Besbes, JJ Greffet
Applied Physics Letters<\/em> 100 (24)
2012<\/p>\n

Highly efficient thermal glue for carbon nanotubes based on azide polymers<\/strong>
Y Ni, H Le Khanh, Y Chalopin, J Bai, P Lebarny, L Divay, S Volz
Applied Physics Letters<\/em> 100 (19)
2012<\/p>\n

Thermal interface conductance in Si\/Ge superlattices by equilibrium molecular dynamics<\/strong>
Y Chalopin, K Esfarjani, A Henry, S Volz, G Chen
Physical Review B<\/em> 85 (19), 195302
2012<\/p>\n

Radiative heat transfer from a black body to dielectric nanoparticles<\/strong>
Y Chalopin, H Dammak, M Laroche, M Hayoun, JJ Greffet
Physical Review B<\/em> 84 (22), 224301
2011<\/p>\n

Tunable superlattice in-plane thermal conductivity based on asperity sharpness at interfaces: Beyond Ziman\u2019s model of specularity<\/strong>
A Rajabpour, SM Vaez Allaei, Y Chalopin, F Kowsary, S Volz
Journal of Applied Physics<\/em> 110 (11)
2011<\/p>\n

Dammak et al. Reply<\/strong>
H Dammak, M Hayoun, Y Chalopin, JJ Greffet
Physical Review Letters<\/em> 107 (19), 198902
2011<\/p>\n

Thermal resistance of metal nanowire junctions in the ballistic regime<\/strong>
R Venkatesh, J Amrit, Y Chalopin, S Volz
Physical Review B<\/em> 83 (11), 115425
2011<\/p>\n

Comment on \u201cQuantum thermal bath for molecular dynamics simulation\u201d reply<\/strong>
H Dammak, M Hayoun, Y Chalopin, JJ Greffet
Physical Review Letters<\/em> 107 (19)
2011<\/p>\n

Erratum:\u201cUpper bound to the thermal conductivity of carbon nanotube pellets\u201d[J. Appl. Phys. 105, 084301 (2009)]<\/strong>
Y Chalopin, S Volz, N Mingo
Journal of Applied Physics<\/em> 108 (3), 039902
2010<\/p>\n

Upper bound to the thermal conductivity of carbon nanotube pellets (vol 105, 084301, 2009)<\/strong>
Y Chalopin, S Volz, N Mingo
Journal of Applied Physics<\/em> 108 (3)
2010<\/p>\n

Carbon nanotube microarchitectures for enhanced thermal conduction at ultralow mass fraction in polymer composites<\/strong>
M Bozlar, D He, J Bai, Y Chalopin, N Mingo, S Volz
Advanced Materials<\/em> 22 (14), 1654-1658
2010<\/p>\n

Quantum thermal bath for molecular dynamics simulation<\/strong>
H Dammak, Y Chalopin, M Laroche, M Hayoun, JJ Greffet
Physical Review Letters<\/em> 103 (19), 190601
2009<\/p>\n

Upper bound to the thermal conductivity of carbon nanotube pellets<\/strong>
Y Chalopin, S Volz, N Mingo
Journal of Applied Physics<\/em> 105 (8)
2009<\/p>\n

Atomic-scale three-dimensional phononic crystals with a very low thermal conductivity to design crystalline thermoelectric devices<\/strong>
JN Gillet, Y Chalopin, S Volz
2009<\/p>\n

Turning carbon nanotubes from exceptional heat conductors into insulators<\/strong>
RS Prasher, XJ Hu, Y Chalopin, N Mingo, K Lofgreen, S Volz, F Cleri, …
Physical Review Letters<\/em> 102 (10), 105901
2009<\/p>\n

Adsorption and organisation of para-hexaphenyl molecules on Si (100)<\/strong>
M Cranney, Y Chalopin, AJ Mayne, G Dujardin
Applied Physics A<\/em> 94, 767-773
2009<\/p>\n

\u00a0<\/p>\n

Predominance of thermal contact resistance in a silicon nanowire on a planar substrate<\/strong>
Y Chalopin, JN Gillet, S Volz
Physical Review B<\/em> 77 (23), 233309
2008<\/p>\n

\u00a0<\/p>\n

Distinguishing different isomers of the photochromic CMTE molecule on the Si (100) surface studied by STM<\/strong>
A Bellec, M Cranney, Y Chalopin, Mayne, G Comtet, G Dujardin
The Journal of Physical Chemistry C<\/em> 111 (40), 14818-14822
2007<\/p>\n

\u00a0<\/p>\n

\u00a0<\/p>\t\t\t\t\t\t\t\t<\/div>\n\t\t\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/div>\n\t\t\t\t\t<\/div>\n\t\t<\/section>\n\t\t\t\t<\/div>\n\t\t","protected":false},"excerpt":{"rendered":"

Peer Review Papers GPCR Signaling: A Study of the Interplay between Structure, Energy, and FunctionChalopin, Y.Proteins: Structure, Function, and Bioinformatics2024 Phonon-assisted electron-proton transfer in [FeFe] hydrogenases: Topological role of clustersY Chalopin, SP Cramer, S ArragainBiophysical Journal 122 (8), 1557-15672023 Energy bilocalization effect and the emergence of molecular functions in proteinsY Chalopin, J SparfelFrontiers in Molecular…
Read more<\/a><\/p>\n","protected":false},"author":1,"featured_media":229,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"footnotes":""},"class_list":["post-10","page","type-page","status-publish","has-post-thumbnail","hentry"],"yoast_head":"\nPublications - Physical Biology of Complex Systems Group<\/title>\n<meta name=\"robots\" content=\"index, follow, max-snippet:-1, max-image-preview:large, max-video-preview:-1\" \/>\n<link rel=\"canonical\" href=\"https:\/\/biodelya.com\/index.php\/about\/\" \/>\n<meta property=\"og:locale\" content=\"en_US\" \/>\n<meta property=\"og:type\" content=\"article\" \/>\n<meta property=\"og:title\" content=\"Publications - Physical Biology of Complex Systems Group\" \/>\n<meta property=\"og:description\" content=\"Peer Review Papers GPCR Signaling: A Study of the Interplay between Structure, Energy, and FunctionChalopin, Y.Proteins: Structure, Function, and Bioinformatics2024 Phonon-assisted electron-proton transfer in [FeFe] hydrogenases: Topological role of clustersY Chalopin, SP Cramer, S ArragainBiophysical Journal 122 (8), 1557-15672023 Energy bilocalization effect and the emergence of molecular functions in proteinsY Chalopin, J SparfelFrontiers in Molecular… Read more\" \/>\n<meta property=\"og:url\" content=\"https:\/\/biodelya.com\/index.php\/about\/\" \/>\n<meta property=\"og:site_name\" content=\"Physical Biology of Complex Systems Group\" \/>\n<meta property=\"article:modified_time\" content=\"2024-06-18T10:13:02+00:00\" \/>\n<meta property=\"og:image\" content=\"https:\/\/biodelya.com\/wp-content\/uploads\/2024\/03\/cropped-7khb0.png\" \/>\n\t<meta property=\"og:image:width\" content=\"657\" \/>\n\t<meta property=\"og:image:height\" content=\"810\" \/>\n\t<meta property=\"og:image:type\" content=\"image\/png\" \/>\n<meta name=\"twitter:card\" content=\"summary_large_image\" \/>\n<meta name=\"twitter:label1\" content=\"Est. reading time\" \/>\n\t<meta name=\"twitter:data1\" content=\"7 minutes\" \/>\n<script type=\"application\/ld+json\" class=\"yoast-schema-graph\">{\"@context\":\"https:\\\/\\\/schema.org\",\"@graph\":[{\"@type\":\"WebPage\",\"@id\":\"https:\\\/\\\/biodelya.com\\\/index.php\\\/about\\\/\",\"url\":\"https:\\\/\\\/biodelya.com\\\/index.php\\\/about\\\/\",\"name\":\"Publications - 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